Preheat oven to 350˚F (180˚C) and line a muffin tray with paper liners.
Squeezed excess water from the shredded zucchini using a paper towel, set aside.
In a bowl, whisk together the flour, cocoa powder, baking soda and salt, set aside.
In a large bowl with an electric mixer on a low setting, beat together the oil, brown sugar twin, vanilla extract and eggs, until combined.
Add the zucchini, carrot, applesauce, and almond milk, mixing until combined.
Slowly add the dry ingredients, beating until smooth and scraping sides when necessary.
Fold in the chocolate chips.
Using a cookie scoop, evenly fill the muffin liners with the batter.
Top with extra chocolate chips (optional), and bake for 22 - 25 minutes.
Remove from oven, and all the muffins to cool for about 5 minutes before transferring to a cooling rack.